LI Xiu-ling,WANG Xiao-xiao,ZHANG Zhong-yang,et al (National Vaccine & Serum Institute,Beijing 100024,China)Objective To analyze the gene sequence and its character of varicella-zoster virus(VZV)84-7 strain isolated in China.Methods Purified virus particles of VZV were obtained by ultracentrifugation,from which viral genomic DNA was extracted with benzene-chloramine then ultrasonicated,and the gene fragments at lengths of 1 500 ~ 3 000 bp were recovered and cloned into vector pUC18 to construct viral DNA library.The genomic DNAs were sequenced,and the results were compared with those of wild Dumas strain,based on which a phylogenetic tree was generated to analyze the homologies of VZV84-7 strain to other strains.Results The whole genome of VZV84-7 strain consisted of 125 083 bp,with a G + C content of 46.1%.The lengths of regions UL,TRL,IRL,Us,TRS and IRS were 104 746,89,89,5 235,7 462 and 7 462 bp,while the G + C contents were 44.3%,69.7%,69.7%,42.8%,59.3% and 59.3%,respectively.The copy numbers of repeat regions R2,R4 and R5 in the genome were 7,9 and 1 respectively.A total of 71 ORFs were found in the genome of VZV84-7 strain,of which 3 genes were located within the repeat sequences,therefore the sequence of ORFs 69 ~ 71 in IRS region were completely identical to that of ORFs 62 ~ 64 in TRS region.A total of 248 nucleotide substitutions including a part of insertion and deletion mutations were observed as compared with Dumas strain,most of which were single nucleotide polymorphisms(SNPs).Transitions were more frequent than transversions(66% vs 34%).Phylogenetic tree showed that the homologies of VZV84-7 strain to other VZV strains were more than 95%.Conclusion Though VZV84-7 strain was unique genetically,it was highly homologous to other VZV strains.
2010 01 v.23 [Abstract][OnlineView][Download 365K]